Genomic Coordinate Tile

Generate a coordinate file that tiles (non-overlapping) across an entire genome.

Select Genome

Select a reference genome from the provided dropdown menu. The user can customize the window size generated by the tool.

Calculation Options

The 'Window Size' defines the length of each random genomic region in base paris (bp).

Command Line Interface

Usage:

java -jar ScriptManager.jar peak-analysis tile-genome [-fhV] [-o=<output>]
[-w=<window>] <genome>

Input	Description
<genome>	reference genome [sacCer3/sacCer3_cegr/hg38/hg38_contigs/hg19/hg19_contigs/mm10]

Output Options

Option	Description
-o, --output=<output>	specify output directory (name will be genome_tiles_<genome>_<window>bp.<ext>)
-z, --gzip	gzip output (default=false)

Option	Description
-f, --gff	file format output as GFF (default format as BED)
-w, --window=<window>	window size in bp (default=200)