Random Coordinate Generator

Generate random BED coordinates based on reference genome.

Select Genome

Select a reference genome from the provided dropdown menu. The user can customize the number of sites and the window size generated by the tool.

Calculation Options

The 'Number of Sites' specifies the total number of random genomic regions to be generated. The 'Window Size' defines the length of each random genomic region in base paris (bp).

Command Line Interface

Usage:

java -jar ScriptManager.jar peak-analysis rand-coord [-fhV] [-n=<numSites>]
[-o=<output>] [-w=<window>] <genome>

Input	Description
<genome>	reference genome sacCer3 | sacCer3_cegr | hg38 | hg38_contigs | hg19 | hg19_contigs | mm10

Output Options

Option	Description
-o, --output=<output>	specify output directory (name will be random_coordinates_<genome>_<window>bp.<ext>)
-z, --gzip	gzip output (default=false)
-f, --gff	file format output as GFF (default format as BED)
-n, --num-sites=<numSites>	number of sites (default=1000)
-w, --window=<window>	window size in bp (default=200)