Signal Duplication (suspended)
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Signal Duplication is still under development and not yet actively supported.
Calculate duplication statistics at user-specified regions.
Command Line Interface
Usage:
java -jar ScriptManager.jar peak-analysis signal-dup [-hV] [-o=<output>]
[-w=<window>] <bamFile> <gffFile>
| Input | Description |
|---|---|
<bamFile> | The BAM file whose statistics we want. |
<gffFile> | The GFF file indicating the region in which to calculate duplication statistics |
Output Options
| Option | Description |
|---|---|
-o, --output=<output> | specify output file |
| Option | Description |
|---|---|
-w, --window=<window> | size of signal window around center in bp (default=100) |