Expand GFF File

Expands input GFF file by adding positions to the border or around the center

Command Line Interface

Usage:

java -jar ScriptManager.jar coordinate-manipulation expand-gff [-hsV] [-b=<border>]
[-c=<center>] [-o=<output>] <gffFile>

Positional Input

This tool takes a single GFF file for input.

Output Options

Option	Description
-o, --output	specify output directory (default name will be same as original with .bed ext)
-s, --stdout	output bed to STDOUT

Expansion Options

Option	Description
-c, --center	expand from center (default, at 250bp)
-b, --border	add to border