Randomize FASTA
Randomizes FASTA sequence for each input entry
![](/scriptmanager-docs/assets/images/RandomizeFASTAWindow-c0ebfd6e5f74199121d8f66e5b411001.png)
File inputs (FASTA)
Each input FASTA-formatted file with a set of sequences will produce a new FASTA file of the randomized/shuffled sequences.
When using the GUI, make sure your input is properly formatted and uses the appropriate FASTA (.fa
/ .fa.gz
/ .fasta
/ ...
) extensions.
Command Line Interface
Usage:
java -jar ScriptManager.jar sequence-analysis randomize-fasta [-hV] [-o=<output>]
<fastaFile>
Positional Input
Option | Description |
---|---|
<fastaFile> | reference genome FASTA file |
Output Options
Option | Description |
---|---|
-o, --output=<output> | specify output directory (name will be same as original with .gff ext) |
-z, --gzip | gzip output (default=false) |