Randomize FASTA

Randomizes FASTA sequence for each input entry

File inputs (FASTA)

Each input FASTA-formatted file with a set of sequences will produce a new FASTA file of the randomized/shuffled sequences.

When using the GUI, make sure your input is properly formatted and uses the appropriate FASTA (.fa / .fa.gz / .fasta / ...) extensions.

Command Line Interface

Usage:

java -jar ScriptManager.jar sequence-analysis randomize-fasta [-hV] [-o=<output>]
<fastaFile>

Positional Input

Option	Description
<fastaFile>	reference genome FASTA file

Output Options

Option	Description
-o, --output=<output>	specify output directory (name will be same as original with .gff ext)
-z, --gzip	gzip output (default=false)